: The increasing availability of protein-protein interaction graphs (PPI) requires new efficient tools capable of extracting valuable biological knowledge from these networks. Amon...
We present a new data partitioning strategy for parallel computing on three interconnected clusters. This partitioning has two advantages over existing partitionings. First it can...
The characteristics of irregular algorithms make a parallel implementation difficult, especially for PC clusters or clusters of SMPs. These characteristics may include an unpredi...
In this paper, we present the index-permutation (IP) graph model, and apply it to the systematic development of efficient hierarchical networks. We derive several classes of inter...
Traditional debug methodologies are limited in their ability to provide debugging support for many-core parallel programming. Synchronization problems or bugs due to race conditio...
Chi-Neng Wen, Shu-Hsuan Chou, Tien-Fu Chen, Alan P...