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» Efficient Seeding Techniques for Protein Similarity Search
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MICRO
2003
IEEE
128views Hardware» more  MICRO 2003»
15 years 2 months ago
IPStash: a Power-Efficient Memory Architecture for IP-lookup
Abstract—High-speed routers often use commodity, fully-associative, TCAMs (Ternary Content Addressable Memories) to perform packet classification and routing (IP lookup). We prop...
Stefanos Kaxiras, Georgios Keramidas
SIGMOD
2008
ACM
142views Database» more  SIGMOD 2008»
15 years 9 months ago
Cost-based variable-length-gram selection for string collections to support approximate queries efficiently
Approximate queries on a collection of strings are important in many applications such as record linkage, spell checking, and Web search, where inconsistencies and errors exist in...
Xiaochun Yang, Bin Wang, Chen Li
BMCBI
2010
128views more  BMCBI 2010»
14 years 9 months ago
VIGOR, an annotation program for small viral genomes
Background: The decrease in cost for sequencing and improvement in technologies has made it easier and more common for the re-sequencing of large genomes as well as parallel seque...
Shiliang Wang, Jaideep P. Sundaram, David Spiro
112
Voted
ACMSE
2009
ACM
15 years 4 months ago
Applying randomized projection to aid prediction algorithms in detecting high-dimensional rogue applications
This paper describes a research effort to improve the use of the cosine similarity information retrieval technique to detect unknown, known or variances of known rogue software by...
Travis Atkison
BMCBI
2005
130views more  BMCBI 2005»
14 years 9 months ago
Squid - a simple bioinformatics grid
Background: BLAST is a widely used genetic research tool for analysis of similarity between nucleotide and protein sequences. This paper presents a software application entitled &...
Paulo C. Carvalho, Rafael V. Glória, Antoni...