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» Efficient and Scalable Indexing Techniques for Biological Se...
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SIGMOD
2007
ACM
169views Database» more  SIGMOD 2007»
15 years 9 months ago
Genome-scale disk-based suffix tree indexing
With the exponential growth of biological sequence databases, it has become critical to develop effective techniques for storing, querying, and analyzing these massive data. Suffi...
Benjarath Phoophakdee, Mohammed J. Zaki
ICDM
2003
IEEE
160views Data Mining» more  ICDM 2003»
15 years 2 months ago
Indexing and Mining Free Trees
Tree structures are used extensively in domains such as computational biology, pattern recognition, computer networks, and so on. In this paper, we present an indexing technique f...
Yun Chi, Yirong Yang, Richard R. Muntz
BMCBI
2010
108views more  BMCBI 2010»
14 years 7 months ago
BIGSdb: Scalable analysis of bacterial genome variation at the population level
Background: The opportunities for bacterial population genomics that are being realised by the application of parallel nucleotide sequencing require novel bioinformatics platforms...
Keith A. Jolley, Martin C. J. Maiden
BMCBI
2010
198views more  BMCBI 2010»
14 years 9 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
CIKM
1998
Springer
15 years 1 months ago
Efficient Enumeration of Frequent Sequences
In this paper we present SPADE, a new algorithm for fast discovery of Sequential Patterns. The existing solutions to this problem make repeated database scans, and use complex has...
Mohammed Javeed Zaki