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» Efficient protein alignment algorithm for protein search
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BMCBI
2008
155views more  BMCBI 2008»
14 years 11 months ago
AMMOS: Automated Molecular Mechanics Optimization tool for in silico Screening
Background: Virtual or in silico ligand screening combined with other computational methods is one of the most promising methods to search for new lead compounds, thereby greatly ...
Tania Pencheva, David Lagorce, Ilza Pajeva, Bruno ...
WWW
2007
ACM
16 years 10 days ago
SPARQ2L: towards support for subgraph extraction queries in rdf databases
Many applications in analytical domains often have the need to "connect the dots" i.e., query about the structure of data. In bioinformatics for example, it is typical t...
Kemafor Anyanwu, Angela Maduko, Amit P. Sheth
BMCBI
2008
214views more  BMCBI 2008»
14 years 11 months ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
KDD
2008
ACM
147views Data Mining» more  KDD 2008»
16 years 2 days ago
Extracting shared subspace for multi-label classification
Multi-label problems arise in various domains such as multitopic document categorization and protein function prediction. One natural way to deal with such problems is to construc...
Shuiwang Ji, Lei Tang, Shipeng Yu, Jieping Ye
CORR
2007
Springer
104views Education» more  CORR 2007»
14 years 11 months ago
Sorting and Selection in Posets
Classical problems of sorting and searching assume an underlying linear ordering of the objects being compared. In this paper, we study a more general setting, in which some pairs...
Constantinos Daskalakis, Richard M. Karp, Elchanan...