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» Efficient protein alignment algorithm for protein search
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IDEAL
2007
Springer
15 years 5 months ago
PINCoC : A Co-clustering Based Approach to Analyze Protein-Protein Interaction Networks
A novel technique to search for functional modules in a protein-protein interaction network is presented. The network is represented by the adjacency matrix associated with the und...
Clara Pizzuti, Simona E. Rombo
IEEEPACT
2005
IEEE
15 years 5 months ago
Exploiting Coarse-Grained Parallelism to Accelerate Protein Motif Finding with a Network Processor
While general-purpose processors have only recently employed chip multiprocessor (CMP) architectures, network processors (NPs) have used heterogeneous multi-core architectures sin...
Ben Wun, Jeremy Buhler, Patrick Crowley
BMCBI
2008
178views more  BMCBI 2008»
14 years 12 months ago
A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic ana
Background: Protein remote homology detection and fold recognition are central problems in bioinformatics. Currently, discriminative methods based on support vector machine (SVM) ...
Bin Liu, Xiaolong Wang, Lei Lin, Qiwen Dong, Xuan ...
105
Voted
BMCBI
2008
119views more  BMCBI 2008»
14 years 12 months ago
A new method for 2D gel spot alignment: application to the analysis of large sample sets in clinical proteomics
Background: In current comparative proteomics studies, the large number of images generated by 2D gels is currently compared using spot matching algorithms. Unfortunately, differe...
Sabine Pérès, Laurence Molina, Nicol...
PRIB
2009
Springer
120views Bioinformatics» more  PRIB 2009»
15 years 6 months ago
Knowledge-Guided Docking of WW Domain Proteins and Flexible Ligands
Studies of interactions between protein domains and ligands are important in many aspects such as cellular signaling. We present a knowledge-guided approach for docking protein dom...
Haiyun Lu, Hao Li, Shamima Banu Bte Sm Rashid, Wee...