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VLDB
2002
ACM
184views Database» more  VLDB 2002»
14 years 6 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
CSB
2004
IEEE
177views Bioinformatics» more  CSB 2004»
13 years 10 months ago
Compressed Pattern Matching in DNA Sequences
We propose derivative Boyer-Moore (d-BM), a new compressed pattern matching algorithm in DNA sequences. This algorithm is based on the BoyerMoore method, which is one of the most ...
Lei Chen, Shiyong Lu, Jeffrey L. Ram
COCOON
2006
Springer
13 years 10 months ago
A Detachment Algorithm for Inferring a Graph from Path Frequency
: Inferring graphs from path frequency has been studied as an important problem which has a potential application to drug design and elucidation of chemical structures. Given a mul...
Hiroshi Nagamochi
TCS
2008
13 years 6 months ago
Algorithms for computing variants of the longest common subsequence problem
The longest common subsequence(LCS) problem is one of the classical and wellstudied problems in computer science. The computation of the LCS is a frequent task in DNA sequence ana...
Costas S. Iliopoulos, M. Sohel Rahman
CIIA
2009
13 years 7 months ago
Appling A Discrete Particle Swarm Optimization Algorithm to Database Vertical Partition
Vertical partition is an important technique in database design used to enhance performance in database systems. Vertical fragmentation is a combinatorial optimization problem that...
Bilal Benmessahel, Mohamed Touahria