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BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
15 years 8 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang
AOSD
2006
ACM
15 years 8 months ago
Presenting crosscutting structure with active models
When modifying or debugging a software system, among other tasks, developers must often understand and manipulate source code that crosscuts the system’s structure. These tasks ...
Wesley Coelho, Gail C. Murphy
HASKELL
2006
ACM
15 years 8 months ago
Statically typed linear algebra in Haskell
Many numerical algorithms are specified in terms of operations on vectors and matrices. Matrix operations can be executed extremely efficiently using specialized linear algebra k...
Frederik Eaton
SIGSOFT
2006
ACM
15 years 8 months ago
Using task context to improve programmer productivity
When working on a large software system, a programmer typically spends an inordinate amount of time sifting through thousands of artifacts to find just the subset of information n...
Mik Kersten, Gail C. Murphy
VEE
2005
ACM
143views Virtualization» more  VEE 2005»
15 years 8 months ago
Virtual machine showdown: stack versus registers
Virtual machines (VMs) are commonly used to distribute programs in an architecture-neutral format, which can easily be interpreted or compiled. A long-running question in the desi...
Yunhe Shi, David Gregg, Andrew Beatty, M. Anton Er...