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CANDC
2005
ACM
15 years 4 months ago
Integer linear programming as a tool for constructing trees from quartet data
The task of the quartet puzzling problem is to find a best-fitting binary X-tree for a finite n-set from confidence values for the 3 n 4 binary trees with exactly four leaves from...
Jan Weyer-Menkhoff, Claudine Devauchelle, Alexande...
CANDC
2005
ACM
15 years 4 months ago
MSAID: multiple sequence alignment based on a measure of information discrepancy
We propose an algorithm of global multiple sequence alignment that is based on a measure of what we call information discrepancy. The algorithm follows a progressive alignment ite...
Min Zhang, Weiwu Fang, Junhua Zhang, Zhongxian Chi
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CANDC
2004
ACM
15 years 4 months ago
Cycling in ecological networks: Finn's index revisited
A chief cybernetic feature of natural living systems is the recycling of nutrients, which tends to enhance stability and is one of the principal causes of ecosystem complexity. In...
Stefano Allesina, Robert E. Ulanowicz
CANDC
2004
ACM
15 years 4 months ago
Identification of related gene/protein names based on an HMM of name variations
Gene and protein names follow few, if any, true naming conventions and are subject to great variation in different occurrences of the same name. This gives rise to two important p...
Lana Yeganova, Lawrence H. Smith, W. John Wilbur
CANDC
2002
ACM
15 years 4 months ago
QSketcher: an environment for composing music for film
We describe QSketcher, a new environment for composing music for film. The main design focus is the support of the early stages of the creative workflow, from idea conception thro...
Steven Abrams, Ralph Bellofatto, Robert M. Fuhrer,...