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» Empirical determination of effective gap penalties for seque...
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BIOINFORMATICS
2002
64views more  BIOINFORMATICS 2002»
15 years 26 days ago
Empirical determination of effective gap penalties for sequence comparison
J. T. Reese, William R. Pearson
BMCBI
2010
129views more  BMCBI 2010»
15 years 1 months ago
Detection of distant evolutionary relationships between protein families using theory of sequence profile-profile comparison
Background: Detection of common evolutionary origin (homology) is a primary means of inferring protein structure and function. At present, comparison of protein families represent...
Mindaugas Margelevicius, Ceslovas Venclovas
117
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CIKM
2008
Springer
15 years 3 months ago
Pairwise statistical significance of local sequence alignment using multiple parameter sets
Background: Accurate estimation of statistical significance of a pairwise alignment is an important problem in sequence comparison. Recently, a comparative study of pairwise stati...
Ankit Agrawal, Xiaoqiu Huang
BMCBI
2010
103views more  BMCBI 2010»
15 years 1 months ago
MTRAP: Pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of r
Background: Sequence alignment is one of the most important techniques to analyze biological systems. It is also true that the alignment is not complete and we have to develop it ...
Toshihide Hara, Keiko Sato, Masanori Ohya
89
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BMCBI
2006
81views more  BMCBI 2006»
15 years 1 months ago
Multipolar representation of protein structure
Background: That the structure determines the function of proteins is a central paradigm in biology. However, protein functions are more directly related to cooperative effects at...
Apostol Gramada, Philip E. Bourne