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BMCBI
2008
88views more  BMCBI 2008»
14 years 10 months ago
Microarray-based gene set analysis: a comparison of current methods
Background: The analysis of gene sets has become a popular topic in recent times, with researchers attempting to improve the interpretability and reproducibility of their microarr...
Sarah Song, Michael A. Black
ICTAI
2007
IEEE
15 years 4 months ago
Establishing Logical Rules from Empirical Data
We review a method of generating logical rules, or axioms, from empirical data. This method, using closed set properties of formal concept analysis, has been previously described ...
John L. Pfaltz
BMCBI
2010
95views more  BMCBI 2010»
14 years 10 months ago
Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso
Background: Single nucleotide polymorphism (SNP) based association studies aim at identifying SNPs associated with phenotypes, for example, complex diseases. The associated SNPs m...
Can Yang, Xiang Wan, Qiang Yang, Hong Xue, Weichua...
OOPSLA
2005
Springer
15 years 3 months ago
GOOAL: an educational object oriented analysis laboratory
Our goal is to enable rapid production of static and dynamic object models from natural language description of problems. Rapid modeling is achieved through automation of analysis...
Hector G. Pérez-González, Jugal K. K...
VLDB
2007
ACM
145views Database» more  VLDB 2007»
15 years 10 months ago
LCS-TRIM: Dynamic Programming Meets XML Indexing and Querying
In this article, we propose a new approach for querying and indexing a database of trees with specific applications to XML datasets. Our approach relies on representing both the q...
Shirish Tatikonda, Srinivasan Parthasarathy, Matth...