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» Encodings of the Sequence Constraint
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BMCBI
2007
114views more  BMCBI 2007»
14 years 12 months ago
False occurrences of functional motifs in protein sequences highlight evolutionary constraints
Background: False occurrences of functional motifs in protein sequences can be considered as random events due solely to the sequence composition of a proteome. Here we use a nume...
Allegra Via, Pier Federico Gherardini, Enrico Ferr...
SDM
2009
SIAM
111views Data Mining» more  SDM 2009»
15 years 9 months ago
A New Constraint for Mining Sets in Sequences.
Discovering interesting patterns in event sequences is a popular task in the field of data mining. Most existing methods try to do this based on some measure of cohesion to deter...
Bart Goethals, Boris Cule, Céline Robardet
TMI
2010
219views more  TMI 2010»
14 years 6 months ago
Registration of 4D Cardiac CT Sequences Under Trajectory Constraints With Multichannel Diffeomorphic Demons
Abstract--We propose a framework for the nonlinear spatiotemporal registration of 4D time-series of images based on the Diffeomorphic Demons (DD) algorithm. In this framework, the ...
Jean-Marc Peyrat, Herve Delingette, Maxime Sermesa...
JUCS
2006
141views more  JUCS 2006»
14 years 11 months ago
Constraint Based Methods for Biological Sequence Analysis
: The need for processing biological information is rapidly growing, owing to the masses of new information in digital form being produced at this time. Old methodologies for proce...
Maryam Bavarian, Verónica Dahl
CANDC
2008
ACM
14 years 12 months ago
'Genome order index' should not be used for defining compositional constraints in nucleotide sequences
Background: The Z-curve is a three dimensional representation of DNA sequences proposed over a decade ago and has been extensively applied to sequence segmentation, horizontal gen...
Eran Elhaik, Dan Graur, Kresimir Josic