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» Encodings of the Sequence Constraint
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BMCBI
2010
141views more  BMCBI 2010»
14 years 12 months ago
BioPhysConnectoR: Connecting Sequence Information and Biophysical Models
Background: One of the most challenging aspects of biomolecular systems is the understanding of the coevolution in and among the molecule(s). A complete, theoretical picture of th...
Franziska Hoffgaard, Philipp Weil, Kay Hamacher
AAECC
1999
Springer
82views Algorithms» more  AAECC 1999»
14 years 11 months ago
Reasoning over Networks by Symbolic Methods
Effective quantifier elimination procedures for the reals allow to solve problems that can be encoded into corresponding first-order formulas including ordering constraints. In con...
Thomas Sturm
KDD
2012
ACM
217views Data Mining» more  KDD 2012»
13 years 2 months ago
The long and the short of it: summarising event sequences with serial episodes
An ideal outcome of pattern mining is a small set of informative patterns, containing no redundancy or noise, that identifies the key structure of the data at hand. Standard freq...
Nikolaj Tatti, Jilles Vreeken
JCB
2006
97views more  JCB 2006»
14 years 12 months ago
Wavelet Analysis of DNA Walks
A wavelet transform of the DNA "walk" constructed from a genomic sequence offers a direct visualization of short and long-range patterns in nucleotide sequences. We stud...
Adrian D. Haimovich, Bruce Byrne, Ramakrishna Rama...
BMCBI
2011
14 years 3 months ago
Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence
Background: Alternative splicing of pre-mature RNA is an important process eukaryotes utilize to increase their repertoire of different protein products. Several types of differen...
Holger Pillmann, Klas Hatje, Florian Odronitz, Bjo...