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» Engineering a Lightweight Suffix Array Construction Algorith...
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130
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ICALP
2007
Springer
15 years 5 months ago
In-Place Suffix Sorting
Given string T = T[1, . . . , n], the suffix sorting problem is to lexicographically sort the suffixes T[i, . . . , n] for all i. This problem is central to the construction of suf...
Gianni Franceschini, S. Muthukrishnan
109
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CIKM
2005
Springer
15 years 6 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
83
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BIRD
2007
Springer
128views Bioinformatics» more  BIRD 2007»
15 years 7 months ago
Efficient and Scalable Indexing Techniques for Biological Sequence Data
We investigate indexing techniques for sequence data, crucial in a wide variety of applications, where efficient, scalable, and versatile search algorithms are required. Recent res...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
108
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TASLP
2010
106views more  TASLP 2010»
14 years 7 months ago
Efficient and Robust Music Identification With Weighted Finite-State Transducers
We present an approach to music identification based on weighted finite-state transducers and Gaussian mixture models, inspired by techniques used in large-vocabulary speech recogn...
Mehryar Mohri, Pedro Moreno, Eugene Weinstein
191
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ICDE
2004
IEEE
105views Database» more  ICDE 2004»
16 years 2 months ago
SPINE: Putting Backbone into String Indexing
The indexing technique commonly used for long strings, such as genomes, is the suffix tree, which is based on a vertical (intra-path) compaction of the underlying trie structure. ...
Naresh Neelapala, Romil Mittal, Jayant R. Haritsa