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» Enhancing Graph Database Indexing by Suffix Tree Structure
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ICDE
2004
IEEE
139views Database» more  ICDE 2004»
16 years 1 months ago
Engineering a Fast Online Persistent Suffix Tree Construction
Online persistent suffix tree construction has been considered impractical due to its excessive I/O costs. However, these prior studies have not taken into account the effects of ...
Srikanta J. Bedathur, Jayant R. Haritsa
CPM
2007
Springer
134views Combinatorics» more  CPM 2007»
15 years 3 months ago
Efficient Computation of Substring Equivalence Classes with Suffix Arrays
This paper considers enumeration of substring equivalence classes introduced by Blumer et al. [1]. They used the equivalence classes to define an index structure called compact dir...
Kazuyuki Narisawa, Shunsuke Inenaga, Hideo Bannai,...
CIKM
2008
Springer
15 years 1 months ago
A new method for indexing genomes using on-disk suffix trees
We propose a new method to build persistent suffix trees for indexing the genomic data. Our algorithm DiGeST (Disk-Based Genomic Suffix Tree) improves significantly over previous ...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
ICDE
2004
IEEE
105views Database» more  ICDE 2004»
16 years 1 months ago
SPINE: Putting Backbone into String Indexing
The indexing technique commonly used for long strings, such as genomes, is the suffix tree, which is based on a vertical (intra-path) compaction of the underlying trie structure. ...
Naresh Neelapala, Romil Mittal, Jayant R. Haritsa
CIKM
2005
Springer
15 years 5 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...