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» Enhancing Search with Structure
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STOC
2010
ACM
228views Algorithms» more  STOC 2010»
15 years 9 months ago
On the searchability of small-world networks with arbitrary underlying structure
Revisiting the “small-world” experiments of the ’60s, Kleinberg observed that individuals are very effective at constructing short chains of acquaintances between any two p...
Pierre Fraigniaud and George Giakkoupis
122
Voted
ISMB
2004
15 years 6 months ago
Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy
Motivation: Non-coding RNAs (ncRNAs)--functional RNA molecules not coding for proteins--are grouped into hundreds of families of homologs. To find new members of an ncRNA gene fam...
Zasha Weinberg, Walter L. Ruzzo
IMSCCS
2006
IEEE
15 years 10 months ago
Identification of New Members of Hydrophobin Family Using Primary Structure Analysis
Background: Hydrophobins are fungal proteins that can turn into amphipathic membranes at hydrophilic/hydrophobic interfaces by self-assembly. The assemblages by Class I hydrophobi...
Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed O...
142
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NAR
2011
233views Computer Vision» more  NAR 2011»
14 years 7 months ago
ArachnoServer 2.0, an updated online resource for spider toxin sequences and structures
ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms....
Volker Herzig, David L. A. Wood, Felicity Newell, ...
CP
2007
Springer
15 years 10 months ago
Structural Relaxations by Variable Renaming and Their Compilation for Solving MinCostSAT
Searching for optimal solutions to a problem using lower bounds obtained from a relaxation is a common idea in Heuristic Search and Planning. In SAT and CSPs, however, explicit rel...
Miquel Ramírez, Hector Geffner