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» Ensembl Genomes 2016: more genomes, more complexity
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BMCBI
2008
121views more  BMCBI 2008»
14 years 10 months ago
ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequen
Background: Detecting conserved noncoding sequences (CNSs) across species highlights the functional elements. Alignment procedures combined with computational prediction of transc...
Hisakazu Iwama, Yukio Hori, Kensuke Matsumoto, Koj...
BMCBI
2007
107views more  BMCBI 2007»
14 years 10 months ago
A computational approach for detecting peptidases and their specific inhibitors at the genome level
Background: Peptidases are proteolytic enzymes responsible for fundamental cellular activities in all organisms. Apparently about 2–5% of the genes encode for peptidases, irresp...
Lisa Bartoli, Remo Calabrese, Piero Fariselli, Dam...
RECOMB
2010
Springer
14 years 8 months ago
Consistency of Sequence-Based Gene Clusters
In comparative genomics, various combinatorial models can be used to specify gene clusters — groups of genes that are co-located in a set of genomes. Several approaches have been...
Roland Wittler, Jens Stoye
RECOMB
2006
Springer
15 years 10 months ago
Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes
Abstract. Transcriptional interactions in a cell are modulated by a variety of mechanisms that prevent their representation as pure pairwise interactions between a transcription fa...
Kai Wang, Ilya Nemenman, Nilanjana Banerjee, Adam ...
TREC
2003
14 years 11 months ago
Report on the TREC 2003 Experiment: Genomic Track
After retrieval, this simple strategy yield to an important improvement of the average precision: from 17.02 up to 35.80. Task II. Our approach is based on argumentative structurin...
Patrick Ruch, Gilles Cohen, Frédéric...