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107
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CLUSTER
2003
IEEE
15 years 5 months ago
2003
IEEE
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
116
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CAISE
2003
Springer
15 years 5 months ago
2003
Springer
Abstract. The purpose of this article is to propose a scalable, topologically and traffic-wise self-adapting approach to a publish/subscribe paradigm for supporting event-based app...
131
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CIKM
2006
Springer
15 years 3 months ago
2006
Springer
The ability to retrieve molecules based on structural similarity has use in many applications, from disease diagnosis and treatment to drug discovery and design. In this paper, we...
125
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BMCBI
2008
14 years 12 months ago
2008
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
100
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PAMI
2008
14 years 11 months ago
2008
Abstract-Similarity searching often reduces to finding the k nearest neighbors to a query object. Finding the k nearest neighbors is achieved by applying either a depth-first or a ...