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AB
2007
Springer
15 years 3 months ago
A Stochastic Pi Calculus for Concurrent Objects
We present SpiCO, a new modeling and simulation language for systems biology. SpiCO is based on the stochastic π-calculus. It supports higher level modeling via multi-profile con...
Céline Kuttler, Cédric Lhoussaine, J...
PADS
2005
ACM
15 years 3 months ago
The WarpIV Simulation Kernel
ct This paper provides an overview of the WarpIV Simulation Kernel that was designed to be an initial implementation of the Standard Simulation Architecture (SSA). WarpIV is the ne...
Jeffrey S. Steinman
89
Voted
DAC
2011
ACM
13 years 9 months ago
Synchronous sequential computation with molecular reactions
Just as electronic systems implement computation in terms of voltage (energy per unit charge), molecular systems compute in terms of chemical concentrations (molecules per unit vo...
Hua Jiang, Marc D. Riedel, Keshab K. Parhi
SIAMAM
2000
81views more  SIAMAM 2000»
14 years 9 months ago
Electrodiffusion Model of Rectangular Current Pulses in Ionic Channels of Cellular Membranes
A simplified electrodiffusion model for rectangular current pulses in ionic channels of biological membranes is presented. Numerical simulations and a dynamical systems analysis of...
Carl L. Gardner, Joseph W. Jerome, Robert S. Eisen...
IWPSE
2010
IEEE
14 years 7 months ago
An exercise in iterative domain-specific language design
We describe our experiences with the process of designing a domain-specific language (DSL) and corresponding model transformations. The simultaneous development of the language an...
Marcel van Amstel, Mark van den Brand, Luc Engelen