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BMCBI
2008
128views more  BMCBI 2008»
15 years 3 months ago
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer
Background: The analysis of expressed sequence tags (EST) offers a rapid and cost effective approach to elucidate the transcriptome of an organism, but requires several computatio...
Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair...
JCSS
2002
95views more  JCSS 2002»
15 years 3 months ago
Efficient algorithms for locating the length-constrained heaviest segments with applications to biomolecular sequence analysis
We study two fundamental problems concerning the search for interesting regions in sequences: (i) given a sequence of real numbers of length n and an upper bound U; find a consecu...
Yaw-Ling Lin, Tao Jiang, Kun-Mao Chao
PASTE
2005
ACM
15 years 9 months ago
Static control-flow analysis for reverse engineering of UML sequence diagrams
UML sequence diagrams are commonly used to represent the interactions among collaborating objects. Reverse-engineered sequence diagrams are constructed from existing code, and hav...
Atanas Rountev, Olga Volgin, Miriam Reddoch
WSC
1998
15 years 5 months ago
Exploiting Multiple Regeneration Sequences in Simulation Output Analysis
The regenerative method of simulation output analysis exploits the regenerative structure of a stochastic process to break up a path into independent and identically distributed c...
James M. Calvin, Marvin K. Nakayama
PAMI
1998
87views more  PAMI 1998»
15 years 3 months ago
Learning Local Languages and Their Application to DNA Sequence Analysis
—This paper concerns an efficient algorithm for learning in the limit a special type of regular languages called strictly locally testable languages from positive data, and its a...
Takashi Yokomori, Satoshi Kobayashi