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» Evaluating Between-Pathway Models with Expression Data
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CSCLP
2008
Springer
14 years 11 months ago
From Rules to Constraint Programs with the Rules2CP Modelling Language
In this paper, we present a rule-based modelling language for constraint programming, called Rules2CP. Unlike other modelling languages, Rules2CP adopts a single knowledge represen...
François Fages, Julien Martin
ESCIENCE
2007
IEEE
15 years 3 months ago
Distributed and Generic Maximum Likelihood Evaluation
This paper presents GMLE 1 , a generic and distributed framework for maximum likelihood evaluation. GMLE is currently being applied to astroinformatics for determining the shape o...
Travis J. Desell, Nathan Cole, Malik Magdon-Ismail...
RECOMB
2004
Springer
15 years 9 months ago
Learning Regulatory Network Models that Represent Regulator States and Roles
Abstract. We present an approach to inferring probabilistic models of generegulatory networks that is intended to provide a more mechanistic representation of transcriptional regul...
Keith Noto, Mark Craven
CEC
2011
IEEE
13 years 9 months ago
Curiosity-driven optimization
— The principle of artificial curiosity directs active exploration towards the most informative or most interesting data. We show its usefulness for global black box optimizatio...
Tom Schaul, Yi Sun, Daan Wierstra, Faustino J. Gom...
BMCBI
2008
135views more  BMCBI 2008»
14 years 9 months ago
Inferring the role of transcription factors in regulatory networks
Background: Expression profiles obtained from multiple perturbation experiments are increasingly used to reconstruct transcriptional regulatory networks, from well studied, simple...
Philippe Veber, Carito Guziolowski, Michel Le Borg...