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» Evaluating Parallel Computing Systems in Bioinformatics
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190
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SIGMOD
2012
ACM
253views Database» more  SIGMOD 2012»
13 years 7 months ago
Skew-aware automatic database partitioning in shared-nothing, parallel OLTP systems
The advent of affordable, shared-nothing computing systems portends a new class of parallel database management systems (DBMS) for on-line transaction processing (OLTP) applicatio...
Andrew Pavlo, Carlo Curino, Stanley B. Zdonik
EUROPAR
2010
Springer
15 years 6 months ago
Efficient Address Mapping of Shared Cache for On-Chip Many-Core Architecture
Abstract. Performance of the on-chip cache is critical for processor. The multithread program model usually employed by on-chip many-core architectures may have effects on cache ac...
Fenglong Song, Dongrui Fan, Zhiyong Liu, Junchao Z...
BIBM
2008
IEEE
110views Bioinformatics» more  BIBM 2008»
15 years 11 months ago
Genome Alignments Using MPI-LAGAN
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
Ruinan Zhang, Huzefa Rangwala, George Karypis
155
Voted
WEA
2005
Springer
176views Algorithms» more  WEA 2005»
15 years 10 months ago
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Abstract. Many large-scale optimization problems rely on graph theoretic solutions; yet high-performance computing has traditionally focused on regular applications with high degre...
David A. Bader
WSC
1997
15 years 6 months ago
Visualizing Parallel Simulations in Network Computing Environments: A Case Study
Parallel discrete event simulation systems (PDES) are used to simulate large-scale applications such as modeling telecommunication networks, transportation grids, and battlefield...
Christopher D. Carothers, Brad Topol, Richard Fuji...