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» Evaluating Parallel Computing Systems in Bioinformatics
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SIGMOD
2012
ACM
253views Database» more  SIGMOD 2012»
13 years 1 days ago
Skew-aware automatic database partitioning in shared-nothing, parallel OLTP systems
The advent of affordable, shared-nothing computing systems portends a new class of parallel database management systems (DBMS) for on-line transaction processing (OLTP) applicatio...
Andrew Pavlo, Carlo Curino, Stanley B. Zdonik
EUROPAR
2010
Springer
14 years 10 months ago
Efficient Address Mapping of Shared Cache for On-Chip Many-Core Architecture
Abstract. Performance of the on-chip cache is critical for processor. The multithread program model usually employed by on-chip many-core architectures may have effects on cache ac...
Fenglong Song, Dongrui Fan, Zhiyong Liu, Junchao Z...
79
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BIBM
2008
IEEE
110views Bioinformatics» more  BIBM 2008»
15 years 4 months ago
Genome Alignments Using MPI-LAGAN
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
Ruinan Zhang, Huzefa Rangwala, George Karypis
WEA
2005
Springer
176views Algorithms» more  WEA 2005»
15 years 3 months ago
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Abstract. Many large-scale optimization problems rely on graph theoretic solutions; yet high-performance computing has traditionally focused on regular applications with high degre...
David A. Bader
WSC
1997
14 years 11 months ago
Visualizing Parallel Simulations in Network Computing Environments: A Case Study
Parallel discrete event simulation systems (PDES) are used to simulate large-scale applications such as modeling telecommunication networks, transportation grids, and battlefield...
Christopher D. Carothers, Brad Topol, Richard Fuji...