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» Evaluating Parallel Computing Systems in Bioinformatics
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SPAA
2010
ACM
15 years 2 months ago
Implementing and evaluating nested parallel transactions in software transactional memory
Transactional Memory (TM) is a promising technique that simplifies parallel programming for shared-memory applications. To date, most TM systems have been designed to efficientl...
Woongki Baek, Nathan Grasso Bronson, Christos Kozy...
ISPDC
2008
IEEE
15 years 4 months ago
Computing Equilibria in Bimatrix Games by Parallel Support Enumeration
We consider the problem of computing all Nash equilibria in bimatrix games (i.e., nonzero-sum two-player noncooperative games). Computing all Nash equilibria for large bimatrix ga...
Jonathan Widger, Daniel Grosu
EUROPAR
2005
Springer
15 years 3 months ago
Soft Computing Approach to Performance Analysis of Parallel and Distributed Programs
This paper describes a novel approach to performance analysis for parallel and distributed systems that is based on soft computing. We introduce the concept of performance score re...
Hong Linh Truong, Thomas Fahringer
TC
2010
14 years 8 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
85
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ICLP
2004
Springer
15 years 3 months ago
Speculative Computations in Or-Parallel Tabled Logic Programs
Abstract. Pruning operators, such as cut, are important to develop efficient logic programs as they allow programmers to reduce the search space and thus discard unnecessary compu...
Ricardo Rocha, Fernando M. A. Silva, Vítor ...