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» Evaluating Parallel Computing Systems in Bioinformatics
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ICPPW
2009
IEEE
14 years 7 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
IPPS
2005
IEEE
15 years 3 months ago
Processor Allocation for Tasks that is Robust Against Errors in Computation Time Estimates
Heterogeneous computing systems composed of interconnected machines with varied computational capabilities often operate in environments where there may be sudden machine failures...
Prasanna Sugavanam, Howard Jay Siegel, Anthony A. ...
ACIVS
2006
Springer
15 years 3 months ago
Dedicated Hardware for Real-Time Computation of Second-Order Statistical Features for High Resolution Images
We present a novel dedicated hardware system for the extraction of second-order statistical features from high-resolution images. The selected features are based on gray level co-o...
Dimitris G. Bariamis, Dimitrios K. Iakovidis, Dimi...
IPPS
2010
IEEE
14 years 7 months ago
Profitability-based power allocation for speculative multithreaded systems
With the shrinking of transistors continuing to follow Moore's Law and the non-scalability of conventional outof-order processors, multi-core systems are becoming the design ...
Polychronis Xekalakis, Nikolas Ioannou, Salman Kha...
BMCBI
2011
14 years 4 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...