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ICCMS
2009
118views more  ICCMS 2009»
14 years 7 months ago
Optimized Parallel Implementation of Gillespie's First Reaction Method on Graphics Processing Units
The simulation of chemical reacting systems is one of the most challenging topics in Systems Biology, due to their complexity and inherent randomness. The Gillespie's Stochas...
Cristian Dittamo, Davide Cangelosi
ISMIS
2005
Springer
15 years 3 months ago
A Machine Text-Inspired Machine Learning Approach for Identification of Transmembrane Helix Boundaries
In this paper, we adapt a statistical learning approach, inspired by automated topic segmentation techniques in speech-recognized documents to the challenging protein segmentation ...
Betty Yee Man Cheng, Jaime G. Carbonell, Judith Kl...
MMM
2011
Springer
368views Multimedia» more  MMM 2011»
14 years 1 months ago
Correlated PLSA for Image Clustering
Probabilistic Latent Semantic Analysis (PLSA) has become a popular topic model for image clustering. However, the traditional PLSA method considers each image (document) independen...
Peng Li, Jian Cheng, Zechao Li, Hanqing Lu
CMSB
2006
Springer
15 years 1 months ago
Stronger Computational Modelling of Signalling Pathways Using Both Continuous and Discrete-State Methods
Abstract. Starting from a biochemical signalling pathway model expressed in a process algebra enriched with quantitative information we automatically derive both continuous-space a...
Muffy Calder, Adam Duguid, Stephen Gilmore, Jane H...
NIPS
2008
14 years 11 months ago
Evaluating probabilities under high-dimensional latent variable models
We present a simple new Monte Carlo algorithm for evaluating probabilities of observations in complex latent variable models, such as Deep Belief Networks. While the method is bas...
Iain Murray, Ruslan Salakhutdinov