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» Evaluation of a Catalytic Search Algorithm
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NICSO
2010
Springer
15 years 4 months ago
Evaluation of a Catalytic Search Algorithm
We investigate the search properties of pre-evolutionary random catalytic reaction networks, where reactions might be reversible, and replication is not taken for granted. Since it...
Lidia Yamamoto
BMCBI
2010
139views more  BMCBI 2010»
14 years 10 months ago
CMASA: an accurate algorithm for detecting local protein structural similarity and its application to enzyme catalytic site anno
Background: The rapid development of structural genomics has resulted in many "unknown function" proteins being deposited in Protein Data Bank (PDB), thus, the functiona...
Gong-Hua Li, Jing-Fei Huang
93
Voted
CORR
2008
Springer
99views Education» more  CORR 2008»
14 years 10 months ago
Partnering Strategies for Fitness Evaluation in a Pyramidal Evolutionary Algorithm
This paper combines the idea of a hierarchical distributed genetic algorithm with different interagent partnering strategies. Cascading clusters of sub-populations are built from ...
Uwe Aickelin, Larry Bull
CORR
2008
Springer
121views Education» more  CORR 2008»
14 years 10 months ago
On the Application of Hierarchical Coevolutionary Genetic Algorithms: Recombination and Evaluation Partners
This paper examines the use of a hierarchical coevolutionary genetic algorithm under different partnering strategies. Cascading clusters of sub-populations are built from the bott...
Uwe Aickelin, Larry Bull
BMCBI
2010
139views more  BMCBI 2010»
14 years 10 months ago
MOTIPS: Automated Motif Analysis for Predicting Targets of Modular Protein Domains
Background: Many protein interactions, especially those involved in signaling, involve short linear motifs consisting of 5-10 amino acid residues that interact with modular protei...
Hugo Y. K. Lam, Philip M. Kim, Janine Mok, Raffi T...