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BMCBI
2010
104views more  BMCBI 2010»
15 years 2 months ago
Parameters for accurate genome alignment
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
Martin C. Frith, Michiaki Hamada, Paul Horton
BMCBI
2008
121views more  BMCBI 2008»
15 years 2 months ago
ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequen
Background: Detecting conserved noncoding sequences (CNSs) across species highlights the functional elements. Alignment procedures combined with computational prediction of transc...
Hisakazu Iwama, Yukio Hori, Kensuke Matsumoto, Koj...
BMCBI
2005
84views more  BMCBI 2005»
15 years 1 months ago
Information theory-based algorithm for in silico prediction of PCR products with whole genomic sequences as templates
Background: A new algorithm for assessing similarity between primer and template has been developed based on the hypothesis that annealing of primer to template is an information ...
Youfang Cao, Lianjie Wang, Kexue Xu, Chunhai Kou, ...
CCS
2009
ACM
16 years 2 months ago
The union-split algorithm and cluster-based anonymization of social networks
Knowledge discovery on social network data can uncover latent social trends and produce valuable findings that benefit the welfare of the general public. A growing amount of resea...
Brian Thompson, Danfeng Yao
KDD
2008
ACM
165views Data Mining» more  KDD 2008»
16 years 2 months ago
Colibri: fast mining of large static and dynamic graphs
Low-rank approximations of the adjacency matrix of a graph are essential in finding patterns (such as communities) and detecting anomalies. Additionally, it is desirable to track ...
Hanghang Tong, Spiros Papadimitriou, Jimeng Sun, P...