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» Evaluation of clustering algorithms for gene expression data
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BMCBI
2007
130views more  BMCBI 2007»
14 years 9 months ago
Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data
Background: Many researchers are concerned with the comparability and reliability of microarray gene expression data. Recent completion of the MicroArray Quality Control (MAQC) pr...
James J. Chen, Huey-miin Hsueh, Robert R. Delongch...
ISNN
2004
Springer
15 years 2 months ago
A Novel Clustering Analysis Based on PCA and SOMs for Gene Expression Patterns
This paper proposes a novel clustering analysis algorithm based on principal component analysis (PCA) and self-organizing maps (SOMs) for clustering the gene expression patterns. T...
Hong-Qiang Wang, De-Shuang Huang, Xing-Ming Zhao, ...
VLDB
2004
ACM
115views Database» more  VLDB 2004»
15 years 2 months ago
Semantic Mining and Analysis of Gene Expression Data
Association rules can reveal biological relevant relationship between genes and environments / categories. However, most existing association rule mining algorithms are rendered i...
Xin Xu, Gao Cong, Beng Chin Ooi, Kian-Lee Tan, Ant...
BMCBI
2007
128views more  BMCBI 2007»
14 years 9 months ago
Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements
Background: Arabidopsis thaliana is the model species of current plant genomic research with a genome size of 125 Mb and approximately 28,000 genes. The function of half of these ...
Hui Lan, Rachel Carson, Nicholas J. Provart, Antho...
ACAL
2007
Springer
15 years 3 months ago
An Integrated QAP-Based Approach to Visualize Patterns of Gene Expression Similarity
Abstract. This paper illustrates how the Quadratic Assignment Problem (QAP) is used as a mathematical model that helps to produce a visualization of microarray data, based on the r...
Mario Inostroza-Ponta, Alexandre Mendes, Regina Be...