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ISNN
2004
Springer
15 years 3 months ago
A Novel Clustering Analysis Based on PCA and SOMs for Gene Expression Patterns
This paper proposes a novel clustering analysis algorithm based on principal component analysis (PCA) and self-organizing maps (SOMs) for clustering the gene expression patterns. T...
Hong-Qiang Wang, De-Shuang Huang, Xing-Ming Zhao, ...
CSB
2005
IEEE
141views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Reconstructing Phylogenetic Networks Using Maximum Parsimony
Phylogenies—the evolutionary histories of groups of organisms—are one of the most widely used tools throughout the life sciences, as well as objects of research within systema...
Luay Nakhleh, Guohua Jin, Fengmei Zhao, John M. Me...
BMCBI
2010
153views more  BMCBI 2010»
14 years 10 months ago
VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences
Background: Understanding the community structure of microbes is typically accomplished by sequencing 16S ribosomal RNA (16S rRNA) genes. These community data can be represented b...
Hiroshi Mori, Fumito Maruyama, Ken Kurokawa
ATVA
2006
Springer
130views Hardware» more  ATVA 2006»
15 years 1 months ago
The Implementation of Mazurkiewicz Traces in POEM
We present the implementation of the trace theory in a new model checking tool framework, POEM, that has a strong emphasis on Partial Order Methods. A tree structure is used to sto...
Peter Niebert, Hongyang Qu
BMCBI
2008
114views more  BMCBI 2008»
14 years 10 months ago
Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale represen
Background: With the amount of influenza genome sequence data growing rapidly, researchers need machine assistance in selecting datasets and exploring the data. Enhanced visualiza...
Leonid Zaslavsky, Yiming Bao, Tatiana A. Tatusova