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COLING
1992
14 years 11 months ago
Compiling and Using Finite-State Syntactic Rules
A language-independent framework for syntactic finlte-state parsing is discussed. The article presents a framework, a formalism, a compiler and a parser for grammars written in th...
Kimmo Koskenniemi, Pasi Tapanainen, Atro Voutilain...
CSDA
2008
126views more  CSDA 2008»
14 years 10 months ago
A new genetic algorithm in proteomics: Feature selection for SELDI-TOF data
Mass spectrometry from clinical specimens is used in order to identify biomarkers in a diagnosis. Thus, a reliable method for both feature selection and classification is required...
Christelle Reynès, Robert Sabatier, Nicolas...
TCBB
2010
91views more  TCBB 2010»
14 years 4 months ago
SCS: Signal, Context, and Structure Features for Genome-Wide Human Promoter Recognition
This paper integrates the signal, context and structure features for genome-wide promoter recognition, which is critical in many DNA sequence analysis tasks. First, CpG islands ar...
Jia Zeng, Xiaoyu Zhao, Xiao-Qin Cao, Hong Yan
BMCBI
2004
94views more  BMCBI 2004»
14 years 9 months ago
GASP: Gapped Ancestral Sequence Prediction for proteins
Background: The prediction of ancestral protein sequences from multiple sequence alignments is useful for many bioinformatics analyses. Predicting ancestral sequences is not a sim...
Richard J. Edwards, Denis C. Shields
BMCBI
2007
139views more  BMCBI 2007»
14 years 10 months ago
Significance analysis of microarray transcript levels in time series experiments
Background: Microarray time series studies are essential to understand the dynamics of molecular events. In order to limit the analysis to those genes that change expression over ...
Barbara Di Camillo, Gianna Toffolo, Sreekumaran K....