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» Evolution of Biological Complexity
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BMCBI
2010
104views more  BMCBI 2010»
15 years 4 months ago
Analysis of protein-protein docking decoys using interaction fingerprints: application to the reconstruction of CaM-ligand compl
Background: Protein-protein docking for proteins with large conformational changes was analyzed by using interaction fingerprints, one of the scales for measuring similarities amo...
Nobuyuki Uchikoga, Takatsugu Hirokawa
ECCC
2006
107views more  ECCC 2006»
15 years 4 months ago
Energy Complexity and Entropy of Threshold Circuits
Abstract. Circuits composed of threshold gates (McCulloch-Pitts neurons, or perceptrons) are simplified models of neural circuits with the advantage that they are theoretically mor...
Wolfgang Maass, Kei Uchizawa, Rodney J. Douglas
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INFOCOM
2008
IEEE
15 years 10 months ago
Complex Network Measurements: Estimating the Relevance of Observed Properties
Abstract—Complex networks, modeled as large graphs, received much attention during these last years. However, data on such networks is only available through intricate measuremen...
Matthieu Latapy, Clémence Magnien
BMCBI
2006
153views more  BMCBI 2006»
15 years 4 months ago
The 3of5 web application for complex and comprehensive pattern matching in protein sequences
Background: The identification of patterns in biological sequences is a key challenge in genome analysis and in proteomics. Frequently such patterns are complex and highly variabl...
Markus Seiler, Alexander Mehrle, Annemarie Poustka...
BMCBI
2006
145views more  BMCBI 2006»
15 years 4 months ago
Querying the public databases for sequences using complex keywords contained in the feature lines
Background: High throughput technologies often require the retrieval of large data sets of sequences. Retrieval of EMBL or GenBank entries using keywords is easy using tools such ...
Olivier Croce, Michaël Lamarre, Richard Chris...