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» Evolution of Biological Complexity
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SIGMOD
2007
ACM
141views Database» more  SIGMOD 2007»
16 years 4 months ago
Assisted querying using instant-response interfaces
We demonstrate a novel query interface that enables users to construct a rich search query without any prior knowledge of the underlying schema or data. The interface, which is in...
Arnab Nandi, H. V. Jagadish
ASM
2010
ASM
16 years 28 days ago
Reasoned Modelling Critics: Turning Failed Proofs into Modelling Guidance
The activities of formal modelling and reasoning are closely related. But while the rigour of building formal models brings significant benefits, formal reasoning remains a major...
Andrew Ireland, Gudmund Grov, Michael Butler
CMSB
2009
Springer
15 years 10 months ago
Probabilistic Approximations of Signaling Pathway Dynamics
Systems of ordinary differential equations (ODEs) are often used to model the dynamics of complex biological pathways. We construct a discrete state model as a probabilistic appro...
Bing Liu, P. S. Thiagarajan, David Hsu
BIBE
2007
IEEE
110views Bioinformatics» more  BIBE 2007»
15 years 10 months ago
Toward Petascale Simulation of Cellular Microphysiology
Abstract-MCell is a Monte Carlo simulator of cell microphysiology, and the scalable variant can be used to study challenging problems of interest to the biological community. MCell...
Scott B. Baden, Terrence J. Sejnowski, Thomas M. B...
COCOA
2007
Springer
15 years 10 months ago
A New Dynamic Programming Algorithm for Multiple Sequence Alignment
Abstract. Multiple sequence alignment (MSA) is one of the most basic and central tasks for many studies in modern biology. In this paper, we present a new progressive alignment alg...
Jean-Michel Richer, Vincent Derrien, Jin-Kao Hao