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BMCBI
2011
14 years 5 months ago
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...
NAR
2011
199views Computer Vision» more  NAR 2011»
14 years 1 months ago
RepTar: a database of predicted cellular targets of host and viral miRNAs
Computational identification of putative microRNA (miRNA) targets is an important step towards elucidating miRNA functions. Several miRNA target-prediction algorithms have been de...
Naama Elefant, Amnon Berger, Harel Shein, Matan Ho...
GECCO
2007
Springer
196views Optimization» more  GECCO 2007»
15 years 4 months ago
Optimal nesting of species for exact cover of resources: two against many
The application of resource-defined fitness sharing (RFS) to shape nesting problems reveals a remarkable ability to discover tilings [7, 8]. These tilings represent exact covers...
Jeffrey Horn
UPP
2004
Springer
15 years 3 months ago
Bio-inspired Computing Paradigms (Natural Computing)
Abstract. This is just a glimpse to the fruitful and constant preoccupation of computer science to try to get inspired by biology, at various levels. Besides briefly discussing th...
Gheorghe Paun
BMCBI
2010
104views more  BMCBI 2010»
14 years 10 months ago
Parameters for accurate genome alignment
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
Martin C. Frith, Michiaki Hamada, Paul Horton