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BMCBI
2004
133views more  BMCBI 2004»
14 years 10 months ago
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
Background: RNA secondary structure prediction methods based on probabilistic modeling can be developed using stochastic context-free grammars (SCFGs). Such methods can readily co...
Robin D. Dowell, Sean R. Eddy
BMCBI
2004
150views more  BMCBI 2004»
14 years 10 months ago
Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
Background: The discovery of cis-regulatory modules in metazoan genomes is crucial for understanding the connection between genes and organism diversity. It is important to quanti...
Saurabh Sinha, Mark D. Schroeder, Ulrich Unnerstal...
FPL
2010
Springer
188views Hardware» more  FPL 2010»
14 years 8 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
PPSN
2010
Springer
14 years 8 months ago
Defining and Optimizing Indicator-Based Diversity Measures in Multiobjective Search
Abstract. In this paper, we elaborate how decision space diversity can be integrated into indicator-based multiobjective search. We introduce DIOP, the diversity integrating multio...
Tamara Ulrich, Johannes Bader, Lothar Thiele
BMCBI
2008
137views more  BMCBI 2008»
14 years 10 months ago
VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays
Background: Microarray experiments generate vast amounts of data. The functional context of differentially expressed genes can be assessed by querying the Gene Ontology (GO) datab...
Hans A. Kestler, André Müller, Johann ...