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» Evolutionary algorithms and dynamic programming
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DLS
2008
213views Languages» more  DLS 2008»
15 years 6 months ago
A parsing machine for PEGs
Parsing Expression Grammar (PEG) is a recognition-based foundation for describing syntax that renewed interest in top-down parsing approaches. Generally, the implementation of PEG...
Sérgio Medeiros, Roberto Ierusalimschy
RECOMB
2005
Springer
16 years 4 months ago
Improved Recombination Lower Bounds for Haplotype Data
Recombination is an important evolutionary mechanism responsible for the genetic diversity in humans and other organisms. Recently, there has been extensive research on understandi...
Vineet Bafna, Vikas Bansal
BMCBI
2007
148views more  BMCBI 2007»
15 years 4 months ago
Computation of significance scores of unweighted Gene Set Enrichment Analyses
Background: Gene Set Enrichment Analysis (GSEA) is a computational method for the statistical evaluation of sorted lists of genes or proteins. Originally GSEA was developed for in...
Andreas Keller, Christina Backes, Hans-Peter Lenho...
JGAA
2007
124views more  JGAA 2007»
15 years 4 months ago
Simultaneous Border Segmentation of Doughnut-Shaped Objects in Medical Images
Image segmentation with specific constraints has found applications in several areas such as biomedical image analysis and data mining. In this paper, we study the problem of sim...
Xiaodong Wu, Michael B. Merickel
RECOMB
2009
Springer
16 years 5 months ago
Lifting Prediction to Alignment of RNA Pseudoknots
Prediction and alignment of RNA pseudoknot structures are NP-hard. Nevertheless, several efficient prediction algorithms by dynamic programming have been proposed for restricted cl...
Mathias Möhl, Rolf Backofen, Sebastian Will