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» Evolutionary algorithms and dynamic programming
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150
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BMEI
2008
IEEE
15 years 11 months ago
A New Approach for Tree Alignment Based on Local Re-Optimization
Multiple sequence alignment is the most fundamental task in bioinformatics and computational biology. In this paper, we present a new algorithm to conduct multiple sequences align...
Feng Yue, Jijun Tang
ECOOP
2008
Springer
15 years 6 months ago
Computing Stack Maps with Interfaces
Abstract. Lightweight bytecode verification uses stack maps to annotate Java bytecode programs with type information in order to reduce the verification to type checking. This pape...
Frédéric Besson, Thomas P. Jensen, T...
POPL
2007
ACM
16 years 5 months ago
Generative unbinding of names
This paper is concerned with a programming language construct for typed name binding that enforces -equivalence. It proves a new result about what operations on names can co-exist...
Andrew M. Pitts, Mark R. Shinwell
140
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PLDI
2006
ACM
15 years 10 months ago
DieHard: probabilistic memory safety for unsafe languages
Applications written in unsafe languages like C and C++ are vulnerable to memory errors such as buffer overflows, dangling pointers, and reads of uninitialized data. Such errors ...
Emery D. Berger, Benjamin G. Zorn
141
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RECOMB
2005
Springer
16 years 5 months ago
Lower Bounds for Maximum Parsimony with Gene Order Data
Abstract. In this paper, we study lower bound techniques for branchand-bound algorithms for maximum parsimony, with a focus on gene order data. We give a simple O(n3 ) time dynamic...
Abraham Bachrach, Kevin Chen, Chris Harrelson, Rad...