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» Evolutionary algorithms and dynamic programming
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RECOMB
2006
Springer
16 years 5 months ago
A Study of Accessible Motifs and RNA Folding Complexity
mRNA molecules are folded in the cells and therefore many of their substrings may actually be inaccessible to protein and microRNA binding. The need to apply an accessability crite...
Ydo Wexler, Chaya Ben-Zaken Zilberstein, Michal Zi...
WABI
2010
Springer
128views Bioinformatics» more  WABI 2010»
15 years 3 months ago
Sparsification of RNA Structure Prediction Including Pseudoknots
Background: Although many RNA molecules contain pseudoknots, computational prediction of pseudoknotted RNA structure is still in its infancy due to high running time and space con...
Mathias Möhl, Raheleh Salari, Sebastian Will,...
218
Voted
CAV
2003
Springer
188views Hardware» more  CAV 2003»
15 years 8 months ago
Thread-Modular Abstraction Refinement
odular Abstraction Refinement Thomas A. Henzinger1 , Ranjit Jhala1 , Rupak Majumdar1 , and Shaz Qadeer2 1 University of California, Berkeley 2 Microsoft Research, Redmond Abstract....
Thomas A. Henzinger, Ranjit Jhala, Rupak Majumdar,...
162
Voted
CORR
2010
Springer
200views Education» more  CORR 2010»
15 years 4 months ago
Unified Compression-Based Acceleration of Edit-Distance Computation
The edit distance problem is a classical fundamental problem in computer science in general, and in combinatorial pattern matching in particular. The standard dynamic programming s...
Danny Hermelin, Gad M. Landau, Shir Landau, Oren W...
ISPD
2012
ACM
283views Hardware» more  ISPD 2012»
14 years 11 days ago
Low-power gated bus synthesis for 3d ic via rectilinear shortest-path steiner graph
In this paper, we propose a new approach for gated bus synthesis [16] with minimum wire capacitance per transaction in three-dimensional (3D) ICs. The 3D IC technology connects di...
Chung-Kuan Cheng, Peng Du, Andrew B. Kahng, Shih-H...