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BMCBI
2005
123views more  BMCBI 2005»
15 years 4 months ago
PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability
Background: Protein sequence alignments have become indispensable for virtually any evolutionary, structural or functional study involving proteins. Modern sequence search and com...
Mindaugas Margelevicius, Ceslovas Venclovas
BMCBI
2010
108views more  BMCBI 2010»
15 years 1 months ago
BIGSdb: Scalable analysis of bacterial genome variation at the population level
Background: The opportunities for bacterial population genomics that are being realised by the application of parallel nucleotide sequencing require novel bioinformatics platforms...
Keith A. Jolley, Martin C. J. Maiden
ICPP
2009
IEEE
15 years 11 months ago
Load Balance in the Phylogenetic Likelihood Kernel
—Recent advances in DNA sequencing techniques have led to an unprecedented accumulation and availability of molecular sequence data that needs to be analyzed. This data explosion...
Alexandros Stamatakis, Michael Ott
170
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ISDA
2009
IEEE
15 years 11 months ago
MAHATMA: A Genetic Programming-Based Tool for Protein Classification
Proteins can be grouped into families according to some features such as hydrophobicity, composition or structure, aiming to establish common biological functions. This paper pres...
Denise Fukumi Tsunoda, Alex Alves Freitas, Heitor ...
GECCO
2007
Springer
172views Optimization» more  GECCO 2007»
15 years 10 months ago
Real-coded ECGA for economic dispatch
In this paper, we propose a new approach that consists of the extended compact genetic algorithm (ECGA) and split-ondemand (SoD), an adaptive discretization technique, to economic...
Chao-Hong Chen, Ying-Ping Chen