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» Evolutionary sequence analysis of complete eukaryote genomes
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CSB
2005
IEEE
182views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Bacterial Whole Genome Phylogeny Using Proteome Comparison and Optimal Reversal Distance
Traditional phylogenetic tree reconstruction is based on point mutations of a single gene. This approach is hardly suitable for genomes whose genes are almost identical and hardly...
Noppadon Khiripet
NAR
2000
122views more  NAR 2000»
14 years 9 months ago
ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons
ProDom contains all protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases (http://www.toulouse. inra.fr/prodom.html ). ProDom-CG result...
Florence Corpet, Florence Servant, Jér&ocir...
NAR
2007
103views more  NAR 2007»
14 years 9 months ago
InSatDb: a microsatellite database of fully sequenced insect genomes
InSatDb presents an interactive interface to query information regarding microsatellite characteristics per se of five fully sequenced insect genomes (fruitfly, honeybee, malarial...
Sunil Archak, Eshwar Meduri, P. Sravana Kumar, Jav...
BMCBI
2005
116views more  BMCBI 2005»
14 years 9 months ago
A computational approach for identifying pathogenicity islands in prokaryotic genomes
Background: Pathogenicity islands (PAIs), distinct genomic segments of pathogens encoding virulence factors, represent a subgroup of genomic islands (GIs) that have been acquired ...
Sung Ho Yoon, Cheol-Goo Hur, Ho-Young Kang, Yeoun ...
TCBB
2011
14 years 4 months ago
Information-Theoretic Model of Evolution over Protein Communication Channel
—In this paper, we propose a communication model of evolution and investigate its information-theoretic bounds. The process of evolution is modeled as the retransmission of infor...
Liuling Gong, Nidhal Bouaynaya, Dan Schonfeld