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» Evolutionary sequence analysis of complete eukaryote genomes
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NAR
2008
122views more  NAR 2008»
13 years 6 months ago
EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information
Gene duplication is common in all three domains of life, especially in eukaryotic genomes. The duplicates provide new material for the action of evolutionary forces such as select...
Guohui Ding, Yan Sun, Hong Li, Zhen Wang, Haiwei F...
RECOMB
2000
Springer
13 years 10 months ago
Early eukaryote evolution based on mitochondrial gene order breakpoints
We present a general heuristicfor the median problem for induced breakpoints on genomes with unequal gene content and incorporate this into a routine for estimating optimal gene o...
David Sankoff, David Bryant, Mélanie Deneau...
BMCBI
2010
144views more  BMCBI 2010»
13 years 6 months ago
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
Background: The investigation of plant genome structure and evolution requires comprehensive characterization of repetitive sequences that make up the majority of higher plant nuc...
Petr Novák, Pavel Neumann, Jirí Maca...
RECOMB
2005
Springer
14 years 6 months ago
Likely Scenarios of Intron Evolution
Whether common ancestors of eukaryotes and prokaryotes had introns is one of the oldest unanswered questions in molecular evolution. Recently completed genome sequences have been u...
Miklós Csürös
BMCBI
2002
81views more  BMCBI 2002»
13 years 6 months ago
Species-specific protein sequence and fold optimizations
Background: An organism's ability to adapt to its particular environmental niche is of fundamental importance to its survival and proliferation. In the largest study of its k...
Michel Dumontier, Katerina Michalickova, Christoph...