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» Evolutionary sequence analysis of complete eukaryote genomes
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BMCBI
2005
100views more  BMCBI 2005»
14 years 9 months ago
Evolutionary models for insertions and deletions in a probabilistic modeling framework
Background: Probabilistic models for sequence comparison (such as hidden Markov models and pair hidden Markov models for proteins and mRNAs, or their context-free grammar counterp...
Elena Rivas
BIBE
2007
IEEE
127views Bioinformatics» more  BIBE 2007»
15 years 4 months ago
A Heuristic for Phylogenetic Reconstruction Using Transposition
Abstract—Because of the advent of high-throughput sequencing and the consequent reduction in cost of sequencing, many organisms have been completely sequenced and most of their g...
Feng Yue, Meng Zhang, Jijun Tang
NAR
2006
77views more  NAR 2006»
14 years 9 months ago
SMART 5: domains in the context of genomes and networks
The Simple Modular Architecture Research Tool 10 (SMART) is an online resource (http://smart.embl. de/) used for protein domain identification and the analysis of protein domain a...
Ivica Letunic, Richard R. Copley, Birgit Pils, Ste...
IV
2000
IEEE
74views Visualization» more  IV 2000»
15 years 2 months ago
Sequence World: A Genetics Database in Virtual Reality
Proper information visualization has always been viewed as an important tool for research. Traditionally, however, it was regarded as only a tool, with information content and vis...
Igor Rojdestvenski, David Modjeska, Fredrik Petter...
BMCBI
2006
127views more  BMCBI 2006»
14 years 9 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...