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» Evolving genetic regulatory networks for systems biology
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BIB
2010
129views more  BIB 2010»
14 years 9 months ago
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
PathwayTools is a production-quality software environment for creating a type of model-organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc integrates ...
Peter D. Karp, Suzanne M. Paley, Markus Krummenack...
89
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GECCO
2005
Springer
155views Optimization» more  GECCO 2005»
15 years 3 months ago
A developmental genetics-inspired approach to robot control
The need to build modular, scalable, and complex technology capable of adaptation, self-assembly, and self-repair has fuelled renewed interest in using approaches inspired by deve...
Sanjeev Kumar
GECCO
2006
Springer
165views Optimization» more  GECCO 2006»
15 years 1 months ago
Comparing mathematical models on the problem of network inference
In this paper we address the problem of finding gene regulatory networks from experimental DNA microarray data. We focus on the evaluation of the performance of different mathemat...
Christian Spieth, Nadine Hassis, Felix Streichert
RECOMB
2004
Springer
15 years 10 months ago
Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response
We present a novel classification-based algorithm called GeneClass for learning to predict gene regulatory response. Our approach is motivated by the hypothesis that in simple orga...
Manuel Middendorf, Anshul Kundaje, Chris Wiggins, ...
ENTCS
2007
96views more  ENTCS 2007»
14 years 9 months ago
Semantics of Biological Regulatory Networks
The aim of the paper is to revisit the model of Biological Regulatory Networks (BRN) which was proposed by René Thomas to model the interactions between a set of genes. We give a...
Gilles Bernot, Franck Cassez, Jean-Paul Comet, Fra...