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» Expected Sequence Similarity Maximization
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IJCAI
2007
14 years 11 months ago
All Common Subsequences
Time series data abounds in real world problems. Measuring the similarity of time series is a key to solving these problems. One state of the art measure is the longest common sub...
Hui Wang
PR
2011
14 years 4 months ago
A sum-over-paths extension of edit distances accounting for all sequence alignments
This paper introduces a simple Sum-over-Paths (SoP) formulation of string edit distances accounting for all possible alignments between two sequences, and extends related previous...
Silvia García-Díez, François ...
VLDB
2002
ACM
184views Database» more  VLDB 2002»
15 years 10 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
ADBIS
2006
Springer
200views Database» more  ADBIS 2006»
15 years 3 months ago
Anomaly Detection Using Unsupervised Profiling Method in Time Series Data
The anomaly detection problem has important applications in the field of fraud detection, network robustness analysis and intrusion detection. This paper is concerned with the prob...
Zakia Ferdousi, Akira Maeda
BMCBI
2004
120views more  BMCBI 2004»
14 years 9 months ago
Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information
Background: Expression microarrays are increasingly used to characterize environmental responses and hostparasite interactions for many different organisms. Probe selection for cD...
Yian A. Chen, David J. Mckillen, Shuyuan Wu, Matth...