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BMCBI
2006
129views more  BMCBI 2006»
14 years 9 months ago
Fast index based algorithms and software for matching position specific scoring matrices
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...
JSAC
2006
133views more  JSAC 2006»
14 years 9 months ago
Code-aided joint channel and frequency offset estimation for DS-CDMA
This paper deals with joint data detection, synchronization and channel parameter estimation for Direct-Sequence Code Division Multiple Access (DS-CDMA) systems over frequency sel...
Mamoun Guenach, Frederik Simoens, Henk Wymeersch, ...
GCB
2004
Springer
223views Biometrics» more  GCB 2004»
15 years 1 months ago
PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
Michael Beckstette, Dirk Strothmann, Robert Homann...
ICML
2004
IEEE
15 years 10 months ago
Distribution kernels based on moments of counts
Many applications in text and speech processing require the analysis of distributions of variable-length sequences. We recently introduced a general kernel framework, rational ker...
Corinna Cortes, Mehryar Mohri
GCB
2000
Springer
137views Biometrics» more  GCB 2000»
15 years 1 months ago
Detecting Sporadic Recombination in DNA Alignments with Hidden Markov Models
Conventional phylogenetic tree estimation methods assume that all sites in a DNA multiple alignment have the same evolutionary history. This assumption is violated in data sets fro...
Dirk Husmeier, Frank Wright