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» Expected Sequence Similarity Maximization
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BMCBI
2004
125views more  BMCBI 2004»
14 years 9 months ago
A fast algorithm for determining the best combination of local alignments to a query sequence
Background: Existing sequence alignment algorithms assume that similarities between DNA or amino acid sequences are linearly ordered. That is, stretches of similar nucleotides or ...
Gavin C. Conant, Andreas Wagner
TIT
2010
112views Education» more  TIT 2010»
14 years 4 months ago
Twice-universal simulation of Markov sources and individual sequences
Abstract-- The problem of universal simulation given a training sequence is studied both in a stochastic setting and for individual sequences. In the stochastic setting, the traini...
Alvaro Martín, Neri Merhav, Gadiel Seroussi...
BMCBI
2007
124views more  BMCBI 2007»
14 years 9 months ago
Protein structural similarity search by Ramachandran codes
Background: Protein structural data has increased exponentially, such that fast and accurate tools are necessary to access structure similarity search. To improve the search speed...
Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang, Ping...
BIOINFORMATICS
2011
14 years 4 months ago
Integrative network alignment reveals large regions of global network similarity in yeast and human
Motivation: High-throughput methods for detecting molecular interactions have produced large sets of biological network data with much more yet to come. Analogous to sequence alig...
Oleksii Kuchaiev, Natasa Przulj
PR
2006
84views more  PR 2006»
14 years 9 months ago
Geometric visualization of clusters obtained from fuzzy clustering algorithms
Fuzzy-clustering methods, such as fuzzy k-means and Expectation Maximization, allow an object to be assigned to multiple clusters with different degrees of membership. However, th...
Luis Rueda, Yuanquan Zhang