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ICASSP
2010
IEEE
14 years 9 months ago
Sparse Bayesian step-filtering for high-throughput analysis of molecular machine dynamics
Nature has evolved many molecular machines such as kinesin, myosin, and the rotary flagellar motor powered by an ion current from the mitochondria. Direct observation of the step-...
Max A. Little, Nick S. Jones
CPHYSICS
2010
88views more  CPHYSICS 2010»
14 years 9 months ago
Distributed computing as a virtual supercomputer: Tools to run and manage large-scale BOINC simulations
Distributed computing (DC) projects tackle large computational problems by exploiting the donated processing power of thousands of volunteered computers, connected through the Int...
Toni Giorgino, Matt J. Harvey, Gianni De Fabritiis
ICCD
2008
IEEE
119views Hardware» more  ICCD 2008»
15 years 6 months ago
Hierarchical simulation-based verification of Anton, a special-purpose parallel machine
—One of the major design verification challenges in the development of Anton, a massively parallel special-purpose machine for molecular dynamics, was to provide evidence that co...
John P. Grossman, John K. Salmon, Richard C. Ho, D...
CIBCB
2006
IEEE
15 years 3 months ago
A Stochastic model to estimate the time taken for Protein-Ligand Docking
Abstract— Quantum mechanics and molecular dynamic simulation provide important insights into structural configurations and molecular interaction data today. To extend this atomi...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
PC
2012
223views Management» more  PC 2012»
13 years 5 months ago
Using shared arrays in message-driven parallel programs
This paper describes a safe and efficient combination of the object-based message-driven execution and shared array parallel programming models. In particular, we demonstrate how ...
Phil Miller, Aaron Becker, Laxmikant V. Kalé...