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BMCBI
2006
179views more  BMCBI 2006»
14 years 9 months ago
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
Background: Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuation...
Howard Salis, Vassilios Sotiropoulos, Yiannis N. K...
SIMULATION
2011
14 years 4 months ago
The Activity-tracking paradigm in discrete-event modeling and simulation: The case of spatially continuous distributed systems
From a modelling and simulation perspective, studying dynamic systems consists of focusing on changes in states. According to the precision of state changes, generic algorithms ca...
Alexandre Muzy, Rajanikanth Jammalamadaka, Bernard...
FCCM
2006
IEEE
133views VLSI» more  FCCM 2006»
15 years 3 months ago
A Scalable FPGA-based Multiprocessor
It has been shown that a small number of FPGAs can significantly accelerate certain computing tasks by up to two or three orders of magnitude. However, particularly intensive lar...
Arun Patel, Christopher A. Madill, Manuel Salda&nt...
WSC
2008
14 years 12 months ago
Implementable MSE-optimal dynamic partial-overlapping batch means estimators for steady-state simulations
Estimating the variance of the sample mean from a stochastic process is essential in assessing the quality of using the sample mean to estimate the population mean which is the fu...
Wheyming Tina Song, Mingchang Chih
BMCBI
2010
149views more  BMCBI 2010»
14 years 9 months ago
RuleMonkey: software for stochastic simulation of rule-based models
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
Joshua Colvin, Michael I. Monine, Ryan N. Gutenkun...