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BMCBI
2010
108views more  BMCBI 2010»
14 years 9 months ago
BIGSdb: Scalable analysis of bacterial genome variation at the population level
Background: The opportunities for bacterial population genomics that are being realised by the application of parallel nucleotide sequencing require novel bioinformatics platforms...
Keith A. Jolley, Martin C. J. Maiden
BMCBI
2010
164views more  BMCBI 2010»
14 years 12 months ago
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL
Background: Molecular interaction networks can be efficiently studied using network visualization software such as Cytoscape. The relevant nodes, edges and their attributes can be...
Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geer...
ICSM
2005
IEEE
15 years 5 months ago
Object-Oriented Reengineering: Patterns and Techniques
Surprising as it may seem, many of the early adopters of the object-oriented paradigm already face a number of problems typically encountered in large-scale legacy systems. Softwa...
Serge Demeyer, Stéphane Ducasse, Oscar Nier...
KBSE
2008
IEEE
15 years 6 months ago
Generic Patch Inference
—A key issue in maintaining Linux device drivers is the need to update drivers in response to evolutions in Linux internal libraries. Currently, there is little tool support for ...
Jesper Andersen, Julia L. Lawall
ICSE
1999
IEEE-ACM
15 years 4 months ago
An Initial Assessment of Aspect-Oriented Programming
The principle of separation of concerns has long been used by software engineers to manage the complexity of software system development. Programming languages help software engin...
Robert J. Walker, Elisa L. A. Baniassad, Gail C. M...