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ICASSP
2008
IEEE
15 years 10 months ago
Probabilistic structural alignment of RNA sequences
We propose an algorithm for estimating the common secondary structure, alignment, and posterior base pairing probabilities for two RNA sequences. A definition of structural align...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
BMCBI
2010
106views more  BMCBI 2010»
15 years 4 months ago
Multiple structure alignment and consensus identification for proteins
Background: An algorithm is presented to compute a multiple structure alignment for a set of proteins and to generate a consensus (pseudo) protein which captures common substructu...
Ivaylo Ilinkin, Jieping Ye, Ravi Janardan
SIAMSC
2008
191views more  SIAMSC 2008»
15 years 4 months ago
ORBIT: Optimization by Radial Basis Function Interpolation in Trust-Regions
Abstract. We present a new derivative-free algorithm, ORBIT, for unconstrained local optimization of computationally expensive functions. A trust-region framework using interpolati...
Stefan M. Wild, Rommel G. Regis, Christine A. Shoe...
GLOBECOM
2008
IEEE
15 years 5 months ago
Cooperative Spectrum Allocation in Centralized Cognitive Networks Using Bipartite Matching
—Conflict free spectrum allocation for secondary users in cognitive networks is a challenging problem, since the accessible spectrum is shared among users. The problem becomes to...
Chengshi Zhao, Mingrui Zou, Bin Shen, Bumjung Kim,...
ACL
2012
13 years 6 months ago
Concept-to-text Generation via Discriminative Reranking
This paper proposes a data-driven method for concept-to-text generation, the task of automatically producing textual output from non-linguistic input. A key insight in our approac...
Ioannis Konstas, Mirella Lapata