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JCB
2002
111views more  JCB 2002»
15 years 1 months ago
A General Edit Distance between RNA Structures
Arc-annotated sequences are useful in representing the structural information of RNA sequences. In general, RNA secondary and tertiary structures can be represented as a set of ne...
Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang
KBSE
2010
IEEE
14 years 11 months ago
A program differencing algorithm for verilog HDL
During code review tasks, comparing two versions of a hardware design description using existing program differencing tools such as diff is inherently limited because existing p...
Adam Duley, Chris Spandikow, Miryung Kim
ICDM
2010
IEEE
142views Data Mining» more  ICDM 2010»
14 years 11 months ago
Causal Discovery from Streaming Features
In this paper, we study a new research problem of causal discovery from streaming features. A unique characteristic of streaming features is that not all features can be available ...
Kui Yu, Xindong Wu, Hao Wang, Wei Ding
BMCBI
2008
138views more  BMCBI 2008»
15 years 1 months ago
Combining transcriptional datasets using the generalized singular value decomposition
Background: Both microarrays and quantitative real-time PCR are convenient tools for studying the transcriptional levels of genes. The former is preferable for large scale studies...
Andreas W. Schreiber, Neil J. Shirley, Rachel A. B...
BMCBI
2006
192views more  BMCBI 2006»
15 years 1 months ago
Analysis of circular genome rearrangement by fusions, fissions and block-interchanges
Background: Analysis of genomes evolving via block-interchange events leads to a combinatorial problem of sorting by block-interchanges, which has been studied recently to evaluat...
Chin Lung Lu, Yen-Lin Huang, Tsui Ching Wang, Hsie...