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RECOMB
2005
Springer
16 years 5 months ago
Information Theoretic Approaches to Whole Genome Phylogenies
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
David Burstein, Igor Ulitsky, Tamir Tuller, Benny ...
RECOMB
2005
Springer
16 years 5 months ago
Learning Interpretable SVMs for Biological Sequence Classification
Background: Support Vector Machines (SVMs) ? using a variety of string kernels ? have been successfully applied to biological sequence classification problems. While SVMs achieve ...
Christin Schäfer, Gunnar Rätsch, Sö...
CADE
2005
Springer
16 years 5 months ago
An Algorithm for Deciding BAPA: Boolean Algebra with Presburger Arithmetic
We describe an algorithm for deciding the first-order multisorted theory BAPA, which combines 1) Boolean algebras of sets of uninterpreted elements (BA) and 2) Presburger arithmeti...
Viktor Kuncak, Huu Hai Nguyen, Martin C. Rinard
STOC
2006
ACM
138views Algorithms» more  STOC 2006»
16 years 5 months ago
The PCP theorem by gap amplification
The PCP theorem [3, 2] says that every language in NP has a witness format that can be checked probabilistically by reading only a constant number of bits from the proof. The cele...
Irit Dinur
STOC
2005
ACM
130views Algorithms» more  STOC 2005»
16 years 5 months ago
From a static impossibility to an adaptive lower bound: the complexity of early deciding set agreement
Set agreement, where processors decisions constitute a set of outputs, is notoriously harder to analyze than consensus where the decisions are restricted to a single output. This ...
Eli Gafni, Rachid Guerraoui, Bastian Pochon